PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 204aa    MW: 22699.9 Da    PI: 6.6325
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23000.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.51.6e-31109165158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep++VNaKQy++Il+RRq+Rak+e+ekk  +++rkpylheSRh hAlrR+Rg+gGrF
  KHN23000.1 109 EEPVFVNAKQYHGILRRRQSRAKAESEKKA-ARNRKPYLHESRHLHALRRARGCGGRF 165
                 69***************************9.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.0E-35107168IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.416108168IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.2E-27110165IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-23111133IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860113133IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.0E-23142165IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MTSTHDLSDN EADDQQQSES QMEPLSANGI SYAGIATQNV QYATPSQLGT GHAVVPPTYP  60
YPDPYYRSIF APYDAQTYPP QPYGGNPMVH LQLMGIQQAG VPLPTDTVEE PVFVNAKQYH  120
GILRRRQSRA KAESEKKAAR NRKPYLHESR HLHALRRARG CGGRFLNSKK DENQQDEVAS  180
TDESQSTINL NSDKNELAPS DRTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20108173166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535082.11e-152PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2
RefseqXP_003535083.11e-151PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
SwissprotQ84JP19e-71NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A0B2QNG11e-152A0A0B2QNG1_GLYSO; Nuclear transcription factor Y subunit A-7
TrEMBLI1L0E61e-152I1L0E6_SOYBN; Uncharacterized protein
TrEMBLK7LBF61e-151K7LBF6_SOYBN; Uncharacterized protein
STRINGGLYMA09G02770.21e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-53nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]